III. AMP COURSES
- The program of coursework taken by AMP students is jointly decided by the student and their Graduate Committee.
- During their senior year, students can apply up to 12 graduate coursework credits towards the AMP degree.
- Students are advised to consider 400/500 level courses first, before enrolling in more advanced, stand-alone graduate courses at the 500 and 600-level. Note that students must enroll in the 500-component of a 400/500 level course in order to obtain graduate credit.
- The Microbiology Program also requires AMP students to take a sequence of core courses during their first year of graduate school: MB 511, 512, 513 and GRAD 520.
- Students have substantial latitude in choosing additional courses from among Microbiology (MB) listings and courses in other colleges and departments that are pertinent to their program.
- All microbiology and some other relevant graduate classes are listed below. (S=Spring; F=Fall, W=Winter); (cr=credit).
Recommended Course Sequence
Senior Year of Undergraduate Program
500-component of 400/500-level slash courses (12 credits)
1st Year in Graduate School
Microbiology core sequence (6 credits)
Additional 500 and 600-level courses (6-15 credits)
Foundational AMP courses at the 400/500 level
MB 516. IMMUNOLOGY (3cr, F). Basic theory and applications of immunochemistry, immunogenetics, and cellular immunology. Examination of immunologically-related diseases. (Co-taught with MB 416).
MB 520. MICROBIAL GENOMES, BIOGEOCHEMISTRY, and DIVERSITY (3cr, F). A survey of microbial diversity from the earliest lifeforms to the modern role of bacteria and archaea in global biogeochemical cycles. Topics covered include molecular evolution, microbial genomics, biochemical diversity, and metabolic pathways that adapt cells to extreme environments. Particular emphasis is placed on marine systems, from photosynthesis in surface waters to life in
MB 530. BACTERIAL PATHOGENESIS (3cr, S). Bacteria pathogenic for humans emphasizing the structural, physiological and genetic mechanisms of pathogenesis. Role of the immune system in pathogenesis and protection. (Co-taught with MB 430).
MB 534. VIROLOGY (3cr, S). Properties of viruses, their biology and pathogenesis. Emphasis on viruses causing human disease. (Co-taught with MB 434).
MB 540. FOOD MICROBIOLOGY (3cr, W). Role of microorganisms in food spoilage, infection, and intoxication; also basic principles in contamination control and germicidal treatment during processing, preparing, and distributing food for consumption. (Co-taught with MB 440).
MB 548. MICROBIAL ECOLOGY (3cr, S). A comparison of soil sediments and freshwater as microbial habitats. Discussion of the role of microorganisms in nutrient cycles, effects of microbial activity on plant and animal life. (Co-taught with MB 448).
MB 556. MICROBIAL GENETICS AND BIOTECHNOLOGY (3cr, W). General biology of natural, genetically engineered, and composite plasmids. Major topics include extrachromosomal DNA replication, plasmid transmission, insertion elements, transposons, gene expression, and recombinant DNA vectors. Relevance to host-parasite and host-symbiotic interaction in both prokaryotes and eukaryotes. (Co-taught with MB 456).
MB 579. FERMENTATION MICROBIOLOGY (3cr, S). An introduction to industrial microbiology with a focus on the physiology of fermentation and use of microorganisms for the production of food ingredients, fermented foods, and beverages. (Co-taught with MB 479).
MB 580. GENERAL PARASITOLOGY (3cr, W). Introduction to parasitology. The course emphasizes medical parasitology, but will cover a broad overview of parasitology, i.e., important groups and host/parasite relationships among all taxa from invertebrates to vertebrates, including mammals. (Co-taught with MB 480).
MB 591. FISH DISEASES IN CONSERVATION BIOLOGY AND AQUACULTURE (4cr, S). The course presents a broad overview of diseases of marine and freshwater fishes, covering important pathogen groups (viruses, bacteria, parasites, fungi), host/parasite relationships and disease ecology. Diseases important to aquaculture and ornamental industries as well as wild fish populations and conservation programs will be included. (Co-taught with MB 491).
MB 541. FOOD MICROBIOLOGY LABORATORY (2cr, W). Laboratory techniques to accompany MB 540. (Co-taught with MB 441).
the ocean crust. (Co-taught with MB 420).
MB 517. IMMUNOLOGY LABORATORY (2cr, F). Laboratory on the applications of current immunological techniques. Concurrent enrollment in MB 516. (Co-taught with MB 417).
CORE COURSES REQUIRED TO BE TAKEN BY AMP STUDENTS DURING FIRST YEAR of GRADUATE SCHOOL
MB 511. SCIENTIFIC SKILLS (1cr, F). Foundational skills for success in graduate school. Students will also become familiar with ongoing microbiology research programs through attending colloquium.
MB 512. HIGHLIGHTS OF MICROBIOLOGY (1cr, W). Designed for students to gain familiarity with the history of microbiology through reading, reviewing and writing about notable papers in the field.
MB 513. MICROBIAL SYSTEMS (3cr, F). Presentation of a modern view of microbiology through the lens of microbes' influences on our planet's habitats and inhabitants. Discusses current research and the use of advanced techniques to illustrate how microbiology is contributing to many cross-disciplinary problems that can involve engineering, public health, sociology, ecology, geology, etc.
GRAD 520. RESPONSIBLE CONDUCT OF RESEARCH (1 cr, all terms). Covers 10 topics in responsible conduct of research: ethical decision making; human subjects; animal welfare; data acquisition; sharing and ownership; research misconduct; conflicts of interest; authorship; peer review; mentor/trainee responsibilities; and collaborative science. Useful to all students who conduct scholarly activity.
ADVANCED STAND-ALONE GRADUATE COURSES
MB 555. BIOLOGY OF THE PROKARYOTES (3cr, W, even years). An integrative course examining bacterial and archaeal life at different levels of biological organization, emphasizing current research and analysis of primary literature. The various life styles of prokaryotes are the common theme of the course. Topics include biofilms, cooperation and communication, development, stress responses, metabolic interactions involved in global nutrient cycling.
MB 668. MICROBIAL BIOINFORMATICS AND GENOME EVOLUTION (4cr, S). Theoretical and practical issues in microbial genome sequencing and annotation, with an emphasis on evolutionary theory and comparative analysis of microbial genome sequences. Metabolic prediction from genomes, with a population genetics perspective on comparative microbial genomics. Exploration of applications of genomics and allied tools to microbial popualtions, includng metagenomics, metaproteomics, and metatranscriptomics.
MB 599. SELECTED TOPICS (0-6cr). Course is repeatable for a maximum of 16 credits. MB 599 designation is used for courses in development.
MB 699. SPECIAL TOPICS: SUCCESS IN THE COLLEGE CLASSROOM (2cr, W). Discusses the shift in higher education from an instructional paradigm to a learning paradigm; develops courses and corresponding learning experiences; develops strategies necessary for success in the classroom and familiarity with learning styles and strategies.
MB 505/605. READING AND CONFERENCE (1-16 cr). This course is repeatable for a maximum of 16 credits.
MB 507/607. SEMINAR(1 cr). Graded P/N. This course is repeatable for a maximum of 9 credits.
MB 510/610. INTERNSHIP(1-16 cr). This course is repeatable for a maximum of 16 credits.
MB 501/601. RESEARCH (1-16 cr). This course is repeatable for a maximum of 16 credits.
MB 503/603. THESIS (1-16 cr). This course is repeatable for a maximum of 16 credits.
Microbiology students have substantial latitude in choosing courses from other colleges and departments for inclusion in their Program of Study. Some commonly selected courses are listed below.
Microbiology Courses Offered Through the College of Veterinary Medicine
VMB 521, Animal Models (3 cr, S odd years)
VMB 523, Zoonoses (3 cr, S)
VMB 630, Mechanisms of Disease (3 cr, W)
VMB 631, Mathematical Modeling of Biological Systems (3 cr, F)
VMB 671, Molecular Tools (3 cr, S)
Molecular and Cellular Biology (MCB) Courses
MCB 525, Techniques in Molecular and Cellular Biology (intensive lab course) (3 cr, 2 weeks before F)
MCB 554, Genomic Organization, Structure and Maintenance (4 cr, F)
MCB 555, Genome Expression and Regulation (4 cr, W)
MCB 556, Cell and Developmental Biology (4 cr, S)
MCB 557, Scientific Skills and Ethics (3 cr, F)
MCB 637, Molecular Host-Microbe Interactions (3 cr, W)
Biochemistry and Biophysics
BB 590, BB 591, BB 592, Core Biochemistry Sequence (3 cr each, F,W,S)
Biological and Ecological Engineering
BEE 585, Metabolic Engineering (3 cr, S)
ST 511, ST 512, ST 513 Methods of Data Analysis and Continuation Courses (4 cr each, F,W,S)
ST 535, Quantitative Ecology (Multivariate Statistics) (3 cr, W 2014)
ST 599, Statistical Methods for Genomics Research (3 cr, W)
Z 594, Community Ecology (5 cr, W, odd years)